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How Northeastern is helping shellfishers and diners of a New England speciality

“The soft-shell clam has been a staple fishery in New England for generations,” said David Kimbro, associate professor of marine and environmental sciences at Northeastern. 

A close up of soft shell clams.
Northeastern researchers and students are investigating the decline in soft-shelled clams, Mya arenaria, in the Plum Island Ecosystems. Photo by Alyssa Stone/Northeastern University
A boat sits on the water during a colorful sunset.
A photo from inside a boat on the water, right after sunset.
A researcher pulls up a collection box of clams out of the water.

It was a beautiful morning on the Parker River. 

The sun peeked through the clouds from the previous weekend’s nor’easter, giving the golden marsh grasses an extra autumnal sheen.

Frenetic yellow-legged shorebirds took flight as the small boat navigated the curves of the meandering river, and even the looming Route One bridge could not mar the pastoral scene, as little traffic passed after the motor was cut and the boat drifted along the shoreline.

Unfortunately, Northeastern University graduate student Grace Abe was not exactly enjoying her surroundings. She had just sunk up to her knees in mud.

“I had it too easy with the first one,” Abe said, while prying a wooden box out of the mud.

The container that emerged was 1-foot-square and several-inches tall, made primarily of wood composite with a mesh screen on its top and landscaping fabric on its bottom. 

It did not look too high-tech. In fact, it looked like it might contain a small pizza. 

But for the last six months, the Beal Box – named after its inventor, University of Maine marine ecologist Brian Beal – had been sitting in the mud flat and acting as a nursery for an iconic and delicious New England species, the soft-shell clam. 

“The soft-shell clan has been a staple fishery in New England for generations,” said David Kimbro, associate professor of marine and environmental sciences at Northeastern. 

A researcher bends down to pull up a clam collection box.
David Kimbro, Northeastern associate professor of marine and environmental studies, sieves a Beal box as part of a research project. Photo by Alyssa Stone/Northeastern University

But the species is under pressure. 

Commercial landings in New England have fallen from an average of 5 million pounds each year prior to the 1980s to 1.75 million pounds in 2024, representing a nearly 80% decline, according to data from NOAA Fisheries, also known as the National Marine Fisheries Service, the federal agency entrusted to care for the nation’s ocean resources and their habitat.

New England commercial soft-shell clam landings: 1950-2024

Landings measured in pounds

19501960197019801990200020102020198002M4M6M8M10M
1960198020002020198002M4M6M8M10M
Soft-shell clam landings in New England are near an all-time low, and have decreased by roughly 80% since around 1980. Source: NOAA Fisheries
New England commercial soft-shell clam landings: 1950-2024
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89070001950
69919001951
67531001952
51276001953
47410001954
36541001955
30486001956
26644001957
23816001958
22638001959
28105001960
25045001961
25164001962
27805001963
26633391964
31944201965
41554001966
42074001967
44926001968
53307001969
65342001970
64651001971
69750001972
78119001973
72936001974
76884001975
85030001976
84126001977
64663001978
61581001979
74473001980
68017001981
63183001982
55872001983
65293001984
55660001985
50448001986
36717001987
32044691988
34251001989
34984791990
26585861991
37169731992
36905441993
20740721994
19009551995
16088081996
17764531997
23881841998
23118141999
23181392000
27071552001
24781642002
24699882003
25242352004
31550372005
54146302006
3511359.092007
3253385.392008
3059082.052009
3336450.012010
3245533.762011
3243660.752012
2988929.592013
2502611.692014
2315689.942015
2237108.062016
2171200.682017
2216694.892018
2304672.682019
2023383.042020
2198993.252021
2116066.232022
1671352.232023
1745368.272024

This has economic and cultural ramifications for shellfishers and the communities in which they live. In fact, the bivalves are so important locally that they are even called “Ipswich clams” in reference to a nearby town.

The decline of the clams also impacts the larger ecosystem.

They are filter feeders, cleaning the water as they eat, and also, in turn, a food source for shorebirds, which attract birdwatchers and nature-lovers to the assortment of protected habitats in the region. 

A photo of the marshy waters where researchers collect clams.
A researcher walks up a boardwalk.
A close up of a person with colorful nails holding up a tiny crab.

In short, the area – known as the Plum Island Ecosystem and consisting of multiple rivers and their watersheds, New England’s largest marshland, barrier beach, and other habitats on the North Shore of Massachusetts – is a pretty special place, according to Anne Giblin, senior scientist at the Plum Island Ecosystems Long-Term Ecological Research (PIE  LTER) program, an integrated research, education, and outreach program which is a collaborator on the research.

But scientists are not exactly sure why the clams are having trouble. 

So two years ago, scientists with the Plum Island research program consulted with local shellfishers who suggested two hypotheses.

Climate change has warmed water temperatures and changed the water chemistry in the estuary, potentially affecting the clams’ ability to reproduce. Meanwhile, an invasive predator called the European green crab has increased in population over the past 100 years as the temperature warms.

“From talking with them we have learned that the loss of this fishery has been devastating,” said Giblin. “The idea that we could shed some light on the decline in clams and improve the fishery is something that everybody wanted to be involved in.”

Which is where Northeastern researchers including Kimbro, Professor of Marine and Environmental Sciences Jonathan Grabowski, Abe, and others come in.

“We want to test if the problem with soft-shell clams in Massachusetts is that they’re not making babies anymore, or is it because predators like the invasive green crab are eating all the clams before they reach market size,” Kimbro explained. 

The Beal boxes are their primary tool.  

Kimbro said clams reproduce by releasing millions of eggs and sperm into the water to be fertilized. The resulting larvae lives in the water, eating phytoplankton and growing until it can “settle” into the mud and develop into an adult clam.

A close up of several soft shell clams.
A close up of soft shell clams.
A far away shot of a researcher crouching to pull up clams, underneath a large building on a foundation above the water.
A close up of a researcher emptying a clam collection box.

The boxes are covered by mud and water with the cycling of the tides, and the mesh is big enough to allow larvae in but small enough to keep predators out, Kimbro and other researchers on the project explained.

The boxes and their contents are compared with samples of mud from the flats that replicate normal conditions.

If the boxes contain no developing clams, that suggests that the clams aren’t reproducing normally, Abe explained.

But if clams are developing inside the boxes – especially if clams are absent from the control samples of mud outside these containers – then green crab predation is likely to blame, since the crabs are unique in their ability to dig into the mud where the adult clams develop, the researchers explained.

A few hours after returning to the dock from collecting the boxes, students and volunteers at PIE LTER’s Rowley Field House opened the containers to see what they would find.

“I’m actually from Rowley, Mass. so my whole life I’ve been eating at all these iconic seafood places – the Clam Box, Bob Lobster, Woodman’s of Essex – so it’s really cool to be a part of the research that’s helping that industry,” said Gillian Nichols, the lead research technician in the Kimbro lab and a master’s student at Northeastern. 

“I think it’s really awesome to work with local shellfishers and super important to spread awareness to the community and give back to the local economy,” Nichols said.

First, co-op student Irleen Kaur measured the depth of the mud in the traps, then Nichols and other students used the mesh as a sieve, shooting water through the box and patiently washing away the mud.

Eventually, the mud revealed its secrets – all sorts of vegetation, miniature mussels, marine worms, and different species of clams including tiny razor clams and false angel wing clams, Atlantic macoma, quahogs and – yep, there they were! – soft-shelled clams averaging about the size of a fingernail.

And while the occasional green crab got through the mesh, they were vastly outnumbered by bivalves.

“We’re finding more clams in the boxes than on the mudflats, and that’s showing us that there is settlement, there are larvae in the water, but that they’re not surviving outside the boxes on the mudflat, and boxes are protecting them from predation,” Abe said.

She acknowledged that the boxes have limitations.

“Obviously, we can’t put mesh over the entire mudflat, nor would we want to,” Abe said.

But perhaps the boxes could shelter developing clams over the winter to allow them to grow to a harvestable size for shellfishers, Abe suggested.  Because once clams reach maturity and are harvested, they make another stop: on a dinner plate.

About a mile and a half from the research station sits the Clam Box of Ipswich restaurant. A bit of a throwback to mid-century kitsch – the restaurant’s name references the shape of the original building, and the dining room’s nautical decor is a prerequisite of the New England seafood joint. Their specialty – the lightly breaded, golden fried whole-bellied native clams. 

It’s an important delicacy to Patrick Saunders, a shellfisher whose family has used the marsh for fishing, clamming and farming since Rowley was founded.

“The marsh and clams have given my family everything,” Saunders said. “I feel a responsibility to give back whatever I can to it.”

So, he joined Grabowski and Kimbro on the study, harkening back to days when he helped his grandfather string large nets on the flats to protect clams from predators and put out Beal boxes with their inventor. 

“I knew the boxes would work, it’s just nobody had been down there doing it,” Saunders said. “Maybe we can go somewhere from here.”

Photography by Alyssa Stone, Northeastern University.

Video by Neely Coe and Taijai Slaughter, Northeastern University.

Produced by Zach Christensen/Northeastern University